MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-29-P2b

Family name MIR-29 (all species)
Seed AGCACCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-29a-1
Paralogues Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Tgu-Mir-29-P2d 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2b-v2  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2b-v2  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xtr-Mir-29-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)		 1A: 2243438-2243497 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b)		 Mir-29-P1b-v1 1A: 2242421-2242484 [+] UCSC Ensembl
Mir-29-P1b-v2 1A: 2242422-2242483 [+] UCSC Ensembl
Mir-29-P2b 1A: 2243438-2243497 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAGAUCUCCGUAACCCCUUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAAUAAUUUCUAGCACCAUUUGAAAUCGGUUAUAGUGAUUGGGGAAUUGCACCUUGUGAAUU
Get precursor sequence
Structure
        10          20        30        40        50          
UGCAGAUCUCCGUAACC--|  UUAGAGG            UUU       C   GUCAAU 
                   CCU       AUGACUGAUUUC   UGGUGUU AGA      \
                   GGG       UAUUGGCUAAAG   ACCACGA UCU      A
UUAAGUGUUCCACGUUAAG^  UUAGUGA            UUU       -   UUAAUA 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-29-P2b_5p*
mirBase accessionMIMAT0026990
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGA -23
Get sequence
Mature sequence

Tgu-Mir-29-P2b_3p
mirBase accessionMIMAT0014532
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence