MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-29-P2

Family name MIR-29 (all species)
Seed AGCACCA
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-29-P1 
Orthologues Aae-Mir-29-P2h  Aca-Mir-29-P2b  Aca-Mir-29-P2d  Aga-Mir-29-P2h  Agr-Mir-29-P2  Ami-Mir-29-P2b  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2g  Bge-Mir-29-P2h  Bla-Mir-29-P2  Bta-Mir-29-P2b  Bta-Mir-29-P2d7  Bta-Mir-29-P2d8  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cja-Mir-29-P2b  Cja-Mir-29-P2d  Cli-Mir-29-P2b  Cli-Mir-29-P2d  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Cmi-Mir-29-P2b  Cmi-Mir-29-P2d  Cpi-Mir-29-P2b  Cpi-Mir-29-P2d  Cpo-Mir-29-P2b  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dan-Mir-29-P2g  Dan-Mir-29-P2h  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dme-Mir-29-P2g  Dme-Mir-29-P2h  Dmo-Mir-29-P2g  Dmo-Mir-29-P2h  Dno-Mir-29-P2b  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Dre-Mir-29-P2d2  Dsi-Mir-29-P2g  Dsi-Mir-29-P2h  Dya-Mir-29-P2g  Dya-Mir-29-P2h  Eba-Mir-29-P2  Ebu-Mir-29-P2e  Ebu-Mir-29-P2f  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2b-v2  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8  Efe-Mir-29-P2k  Efe-Mir-29-P2l  Esc-Mir-29-P2  Ete-Mir-29-P2b  Ete-Mir-29-P2d  Gga-Mir-29-P2b  Gga-Mir-29-P2d  Gja-Mir-29-P2b  Gja-Mir-29-P2d  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Gpa-Mir-29-P2g  Gpa-Mir-29-P2h  Gsp-Mir-29  Hme-Mir-29-P2h  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Hsa-Mir-29-P2d  Laf-Mir-29-P2b  Laf-Mir-29-P2d  Lan-Mir-29-P2i  Lan-Mir-29-P2j  Lch-Mir-29-P2a  Lch-Mir-29-P2b  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2b  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mml-Mir-29-P2d  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2b-v2  Mmr-Mir-29-P2d  Mmu-Mir-29-P2b  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2b  Mun-Mir-29-P2d  Neu-Mir-29-P2b  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2b  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pab-Mir-29-P2d  Pbv-Mir-29-P2b  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pma-Mir-29-P2o1  Pma-Mir-29-P2o2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Snu-Mir-29-P2q  Snu-Mir-29-P2r  Spt-Mir-29-P2b  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sro-Mir-29-P2p1  Sro-Mir-29-P2p2  Sto-Mir-29-P2b  Sto-Mir-29-P2d  Tca-Mir-29-P2g  Tca-Mir-29-P2h  Tgu-Mir-29-P2b  Tgu-Mir-29-P2d  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2b  Xtr-Mir-29-P2d 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000305.1: 408854-408912 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCCAUACUUGGUUUGUGCCUGCUCAGCCCUGGUUUCACGCGGGGCAUAGAGUCUAUUUGUCUUCUAGCACCAUGUGAAAUCAGUUUUGAUCGCGGCAUUUUUCUGCAAUUGCGACU
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Structure
        10         20          30        40        50         
GUGGCCAUACUUGGUUU-     U  --|   CC           C  G  A    GUCUA 
                  GUGCC GC  UCAG  CUGGUUUCACG GG GC UAGA     U
                  UACGG CG  AGUU  GACUAAAGUGU CC CG AUCU     U
UCAGCGUUAACGUCUUUU     -  CU^   UU           A  A  -    UCUGU 
       110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Pau-Mir-29-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCUGGUUUCACGCGGGGCAUAGA -23
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Mature sequence

Pau-Mir-29-P2_3p
mirBase accessionNone
Sequence 
37- UAGCACCAUGUGAAAUCAGUUU -59
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