MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-29-P2o2

Family name MIR-29 (all species)
Seed AGCACCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-29c
Paralogues Pma-Mir-29-P1o1  Pma-Mir-29-P1o2  Pma-Mir-29-P2o1 
Orthologues Agr-Mir-29-P2  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Gsp-Mir-29  Hru-Mir-29-P2  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mgi-Mir-29-P2  Mom-Mir-29-P2  Npo-Mir-29-P2  Obi-Mir-29-P2  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pau-Mir-29-P2  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sko-Mir-29-P2  Sme-Mir-29-o2  Spu-Mir-29-P2  War-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046082.1: 14313120-14313180 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2o2)		 Mir-29-P1o2 NC_046082.1: 14311950-14312009 [-] UCSC Ensembl
Mir-29-P2o2 NC_046082.1: 14313120-14313180 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCGUGGCGGGAGAGGAGCCUCCUACCAGGCUGGUUUCACGUGGUGGCUUGAUGUGAAAGUGCGAUUCUAGCACCAUUUGAAAUCAGUGUUGGUGGGCAGAGCACGUGCGCCCACACCUG
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Structure
        10        20         30         40        50        60
GGGCGUGGCGGGAGAGGAGC  -        -|         C      G  U  UGUGAA 
                    CU CCUACCAG GCUGGUUUCA GUGGUG CU GA      A
                    GA GGGUGGUU UGACUAAAGU UACCAC GA CU      G
GUCCACACCCGCGUGCACGA  C        G^         U      -  U  UAGCGU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-29-P2o2_5p*
mirBase accessionNone
Sequence 
0- GCUGGUUUCACGUGGUGGCUUGA -23
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Mature sequence

Pma-Mir-29-P2o2_3p
mirBase accessionMIMAT0019419
Sequence 
39- UAGCACCAUUUGAAAUCAGUGU -61
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