Mir-29-P1o2

MirGeneDB ID

Pma-Mir-29-P1o2

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-29b

Paralogues

Pma-Mir-29-P1o1 Pma-Mir-29-P2o1 Pma-Mir-29-P2o2

Orthologues

Aae-Mir-29-P1 Aga-Mir-29-P1 Agr-Mir-29-P1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cin-Mir-29-o1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Esc-Mir-29-P1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Isc-Mir-29-P1 Lhy-Mir-29-P1 Llo-Mir-29-P1 Mgi-Mir-29-P1 Mom-Mir-29-P1 Npo-Mir-29-P1 Obi-Mir-29-P1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spu-Mir-29-P1 Tca-Mir-29-P1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046082.1: 14311950-14312009 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1o2)

Mir-29-P1o2 NC_046082.1: 14311950-14312009 [-] UCSC Ensembl
Mir-29-P2o2 NC_046082.1: 14313120-14313180 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGUCCCGUGGGCUGUGCCCGACUCGCGUGACCGAUUUCCCUUGGUGUUUAGAUGUGGAUGUGGUCUCUAGCACCAUUAGAAAUCGGUUAUGCGGGCGGGAAUCGUCACCCACGUCGCCA

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Structure

        10           20        30        40        50          
GGGUCCCGUGGGCUGUG---|   A                 CCU       U   UGUGGA 
                    CCCG CUCGCGUGACCGAUUUC   UGGUGUU AGA      \
                    GGGC GGGCGUAUUGGCUAAAG   ACCACGA UCU      U
ACCGCUGCACCCACUGCUAA^   -                 AUU       -   CUGGUG 
.       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-29-P1o2_5p*

mirBase accession

None

Sequence

0- ACCGAUUUCCCUUGGUGUUUAGA -23

Get sequence

Mature sequence

Pma-Mir-29-P1o2_3p

mirBase accession

MIMAT0019418

Sequence

38- UAGCACCAUUAGAAAUCGGUUA -60

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