MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-29-P1o1

Family name MIR-29 (all species)
Seed AGCACCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-29a
Paralogues Pma-Mir-29-P1o2  Pma-Mir-29-P2o1  Pma-Mir-29-P2o2 
Orthologues Aae-Mir-29-P1  Aga-Mir-29-P1  Agr-Mir-29-P1  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cin-Mir-29-o1  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dpu-Mir-29-P1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Esc-Mir-29-P1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Isc-Mir-29-P1  Lhy-Mir-29-P1  Llo-Mir-29-P1  Mgi-Mir-29-P1  Mom-Mir-29-P1  Npo-Mir-29-P1  Obi-Mir-29-P1  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pau-Mir-29-P1  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rph-Mir-29-P1  Sko-Mir-29-P1  Snu-Mir-29-P1  Spu-Mir-29-P1  Tca-Mir-29-P1  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046098.1: 8340107-8340168 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1o1)		 Mir-29-P1o1 NC_046098.1: 8340107-8340168 [-] UCSC Ensembl
Mir-29-P2o1 NC_046098.1: 8341169-8341232 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUGGUAGUGCCCAGCCCCACCCAGAUGACUGAUUUCUCUUGGUGUUUAGAGUUCCGUAUGCCUGGUCUAGCACCAUUUGAAAUCAGUUAUGUGGAGAGGGUCUUUCUUCGUGUCCGGGC
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGCUGGUAGUGCCCAG--|  CAC   G            UCU       U   GUUCCGU 
                   CCC   CCA AUGACUGAUUUC   UGGUGUU AGA       \
                   GGG   GGU UAUUGACUAAAG   ACCACGA UCU       A
CGGGCCUGUGCUUCUUUCU^  AGA   G            UUU       -   GGUCCGU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-29-P1o1_5p*
mirBase accessionMIMAT0019416
Sequence 
0- ACUGAUUUCUCUUGGUGUUUAGA -23
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Mature sequence

Pma-Mir-29-P1o1_3p
mirBase accessionMIMAT0019417
Sequence 
40- UAGCACCAUUUGAAAUCAGUUA -62
Get sequence