MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-29-o1

Family name

MIR-29 (all species)

Seed

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-29

Paralogues

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bge-Mir-29-P1k Bge-Mir-29-P1l Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cja-Mir-29-P1b-v1 Cja-Mir-29-P1b-v2 Cja-Mir-29-P1d-v1 Cja-Mir-29-P1d-v2 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1b Cmi-Mir-29-P1d Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v2 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Ebu-Mir-29-P1e Ebu-Mir-29-P1f Eca-Mir-29-P1b-v1 Eca-Mir-29-P1b-v2 Eca-Mir-29-P1d-v1 Eca-Mir-29-P1d-v2 Efe-Mir-29-P1i Efe-Mir-29-P1j Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Laf-Mir-29-P1b-v2 Laf-Mir-29-P1d-v1 Laf-Mir-29-P1d-v2 Lan-Mir-29-P1g Lan-Mir-29-P1h Lch-Mir-29-P1b Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Loc-Mir-29-P1d Lpo-Mir-29-P1m Lpo-Mir-29-P1n Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P1d2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mmr-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v2 Mmr-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v2 Mom-Mir-29-P1 Mun-Mir-29-P1b Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Neu-Mir-29-P1b-v1 Neu-Mir-29-P1b-v2 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pab-Mir-29-P1b-v2 Pab-Mir-29-P1d-v1 Pab-Mir-29-P1d-v2 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pma-Mir-29-P1o1 Pma-Mir-29-P1o2 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d5-v2 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P1d6-v2 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spt-Mir-29-P1d Spu-Mir-29-P1 Sro-Mir-29-P1p1 Sro-Mir-29-P1p2 Sto-Mir-29-P1b Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2 Xtr-Mir-29-P1d

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

Bilateria

Genome context
(ci3)

12: 4741540-4741600 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUCGUGUCAAGCCUCUCCCGGCAGGGUAACCGUCUCCUUUUGGUGCAGGAGUUUGUAUAUGAACAUCUAGCACCAUUAGAAAAUGGUAAUUUUAACCGGGAACUUUCAACUGGCUCAAU

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Structure

        10         20         30        40        50          
GUUUCGUGUCAAGCCUC-      C-|    A     CUC  UU      A   GUUUGUA 
                  UCCCGG  AGGGU ACCGU   CU  UGGUGC GGA       \
                  AGGGCC  UUUUA UGGUA   GA  ACCACG UCU       U
UAACUCGGUCAACUUUCA      AA^    A     AAA  UU      A   ACAAGUA 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-29-o1_5p*

mirBase accession

Sequence

0- ACCGUCUCCUUUUGGUGCAGGA -22

Get sequence

Mature sequence

Cin-Mir-29-o1_3p

mirBase accession

Sequence

39- UAGCACCAUUAGAAAAUGGUAA -61

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