Mir-29-P1f

MirGeneDB ID

Ebu-Mir-29-P1f

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-29-P1e Ebu-Mir-29-P2e Ebu-Mir-29-P2f

Orthologues

Aae-Mir-29-P1 Aga-Mir-29-P1 Agr-Mir-29-P1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cin-Mir-29-o1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Esc-Mir-29-P1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Isc-Mir-29-P1 Lhy-Mir-29-P1 Llo-Mir-29-P1 Mgi-Mir-29-P1 Mom-Mir-29-P1 Npo-Mir-29-P1 Obi-Mir-29-P1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spu-Mir-29-P1 Tca-Mir-29-P1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02010484.1: 381441-381502 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCAUGCAGAGCCUGGCUGCGGUACGAGUCUGGUUUCACAUGGUGCCAUAGAUGAAUUCUGGCUGAGUCUAGCACCAUUUGAAAUCAGUGUUCCUACCGUCAGCAGAGCUACAAAAUCAGG

Get precursor sequence

Structure

        10         20         30         40        50        60 
CCGCAUGCAGAGCCUGG-   -     C  GU-|        C       CA    UGAAUUC 
                  CUG CGGUA GA   CUGGUUUCA AUGGUGC  UAGA       \
                  GAC GCCAU CU   GACUAAAGU UACCACG  AUCU       U
GGACUAAAACAUCGAGAC   U     C  UGU^        U       --    GAGUCGG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ebu-Mir-29-P1f_5p*

mirBase accession

None

Sequence

0- CUGGUUUCACAUGGUGCCAUAGA -23

Get sequence

Mature sequence

Ebu-Mir-29-P1f_3p

mirBase accession

None

Sequence

40- UAGCACCAUUUGAAAUCAGUGU -62

Get sequence