Mir-29-P1p2

MirGeneDB ID

Sro-Mir-29-P1p2

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Roscoff worm (Symsagittifera roscoffensis)

MiRBase ID

Paralogues

Sro-Mir-29-P1p1 Sro-Mir-29-P2p1 Sro-Mir-29-P2p2

Orthologues

Aae-Mir-29-P1 Aga-Mir-29-P1 Agr-Mir-29-P1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cin-Mir-29-o1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Esc-Mir-29-P1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Isc-Mir-29-P1 Lhy-Mir-29-P1 Llo-Mir-29-P1 Mgi-Mir-29-P1 Mom-Mir-29-P1 Npo-Mir-29-P1 Obi-Mir-29-P1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spu-Mir-29-P1 Tca-Mir-29-P1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1

Node of Origin (locus)

S. roscoffensis

Node of Origin (family)

Bilateria

Genome context
(GCA_025153585.1_SymRos_1_5_genomic)

JANVAR010000541.1: 217075-217130 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGAUCUCAAGUCAGCUGUAACCUGCCGGUCUGGUUUCACGUGGUUAUUAGCCGGAAAAGAGCUAGCACCACGUCAUACCAGACCAAAAAAUCCAGGACAGUUUUCAUAAAUUGG

Get precursor sequence

Structure

        10        20              30        40        50        
GGAGAUCUCAAGUCAGCUGUAA    CC------|       UUC       UA     CGGA 
                      CCUG        GGUCUGGU   ACGUGGU  UUAGC    \
                      GGAC        CCAGACCA   UGCACCA  GAUCG    A
GGUUAAAUACUUUUGACA----    CUAAAAAA^       UAC       C-     AGAA 
    110       100            90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Po

Star sequence

Sro-Mir-29-P1p2_5p*

mirBase accession

None

Sequence

0- UCUGGUUUCACGUGGUUAUUAGC -23

Get sequence

Mature sequence

Sro-Mir-29-P1p2_3p

mirBase accession

None

Sequence

34- UAGCACCACGUCAUACCAGACC -56

Get sequence