MirGeneDB 3.0

MirGeneDB ID

Sro-Mir-29-P1p2

Family name MIR-29 (all species)
Seed AGCACCA
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-29-P1p1  Sro-Mir-29-P2p1  Sro-Mir-29-P2p2 
Orthologues Aae-Mir-29-P1  Aga-Mir-29-P1  Agr-Mir-29-P1  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cin-Mir-29-o1  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dpu-Mir-29-P1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Esc-Mir-29-P1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Isc-Mir-29-P1  Lhy-Mir-29-P1  Llo-Mir-29-P1  Mgi-Mir-29-P1  Mom-Mir-29-P1  Npo-Mir-29-P1  Obi-Mir-29-P1  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pau-Mir-29-P1  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rph-Mir-29-P1  Sko-Mir-29-P1  Snu-Mir-29-P1  Spu-Mir-29-P1  Tca-Mir-29-P1  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Bilateria
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)
JANVAR010000541.1: 217075-217130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGAUCUCAAGUCAGCUGUAACCUGCCGGUCUGGUUUCACGUGGUUAUUAGCCGGAAAAGAGCUAGCACCACGUCAUACCAGACCAAAAAAUCCAGGACAGUUUUCAUAAAUUGG
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Structure
        10        20              30        40        50        
GGAGAUCUCAAGUCAGCUGUAA    CC------|       UUC       UA     CGGA 
                      CCUG        GGUCUGGU   ACGUGGU  UUAGC    \
                      GGAC        CCAGACCA   UGCACCA  GAUCG    A
GGUUAAAUACUUUUGACA----    CUAAAAAA^       UAC       C-     AGAA 
    110       100            90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Po
Star sequence

Sro-Mir-29-P1p2_5p*

mirBase accessionNone
Sequence
0- UCUGGUUUCACGUGGUUAUUAGC -23
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Mature sequence

Sro-Mir-29-P1p2_3p

mirBase accessionNone
Sequence
34- UAGCACCACGUCAUACCAGACC -56
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