MirGeneDB ID | Sro-Mir-29-P2p1 |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Roscoff worm (Symsagittifera roscoffensis) |
MiRBase ID |
|
Paralogues |
Sro-Mir-29-P1p1
Sro-Mir-29-P1p2
Sro-Mir-29-P2p2
|
Orthologues |
Agr-Mir-29-P2
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cte-Mir-29-P2
Dgr-Mir-29-P2
Dma-Mir-29-P2
Dpu-Mir-29-P2
Eba-Mir-29-P2
Esc-Mir-29-P2
Gsp-Mir-29
Hru-Mir-29-P2
Lgi-Mir-29-P2
Lhy-Mir-29-P2
Llo-Mir-29-P2
Mgi-Mir-29-P2
Mom-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ofu-Mir-29-P2
Ovu-Mir-29-P2
Pau-Mir-29-P2
Pcr-Mir-29-P2
Pdu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Pve-Mir-29-P2
Rph-Mir-29-P2
Sko-Mir-29-P2
Sme-Mir-29-o2
Spu-Mir-29-P2
War-Mir-29-P2
Xbo-Mir-29-P2
|
Node of Origin (locus) |
S. roscoffensis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010000541.1: 102958-103014 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACAUCUGAUUUCAAAGAGGUUUUUUGAAGUCCGGUUUGCCGUGGUGGUUAGAGAACGUAUCAUCUAGCACCAUGUCAUACCGGUCUCUACCUAAAAUUGAAUCGAGCUAAUAUGUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GACAUCUGAUUUCAAAG-------| UUUUUGA U U C G GAAC
AGGU AG CCGGU UG CGUGGUG UUAGA G
UCCA UC GGCCA AC GUACCAC GAUCU U
AUGUAUAAUCGAGCUAAGUUAAAA^ UC----- U U U - ACUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sro-Mir-29-P2p1_5p* |
mirBase accession | None |
Sequence |
0- UCCGGUUUGCCGUGGUGGUUAGA -23
Get sequence
|
Mature sequence |
Sro-Mir-29-P2p1_3p |
mirBase accession | None |
Sequence |
35- UAGCACCAUGUCAUACCGGUCU -57
Get sequence
|