MirGeneDB ID | Bge-Mir-29-P1k |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Mir-29-P1l
Bge-Mir-29-P2g
Bge-Mir-29-P2h
|
Orthologues |
Aae-Mir-29-P1
Aga-Mir-29-P1
Agr-Mir-29-P1
Asu-Mir-29-P1
Bfl-Mir-29-P1
Bla-Mir-29-P1
Cbr-Mir-29-P1
Cel-Mir-29-P1
Cin-Mir-29-o1
Csc-Mir-29-P1
Cte-Mir-29-P1
Dan-Mir-29-P1
Dgr-Mir-29-P1
Dlo-Mir-29-P1
Dma-Mir-29-P1
Dme-Mir-29-P1
Dmo-Mir-29-P1
Dpu-Mir-29-P1
Dsi-Mir-29-P1
Dya-Mir-29-P1
Eba-Mir-29-P1
Esc-Mir-29-P1
Gpa-Mir-29-P1
Gsp-Mir-29
Hme-Mir-29-P1
Hru-Mir-29-P1
Isc-Mir-29-P1
Lhy-Mir-29-P1
Llo-Mir-29-P1
Mgi-Mir-29-P1
Mom-Mir-29-P1
Npo-Mir-29-P1
Obi-Mir-29-P1
Ofu-Mir-29-P1
Ovu-Mir-29-P1
Pau-Mir-29-P1
Pcr-Mir-29-P1
Pdu-Mir-29-P1
Pfl-Mir-29-P1
Pmi-Mir-29-P1
Pve-Mir-29-P1
Rph-Mir-29-P1
Sko-Mir-29-P1
Snu-Mir-29-P1
Spu-Mir-29-P1
Tca-Mir-29-P1
Tur-Mir-29-P1
War-Mir-29-P1
Xbo-Mir-29-P1
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
Bilateria
|
Genome context (Bger_2.0) |
JPZV02062171.1: 158-223 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUUUUCAUUACGUGAGACUUGCUUGAGGACUGGUUUCAAGUUGGUGGUAAGAUUCAGCUUCAUUCAAAACUCUAGCACCAUUUGAAAUCAGUGCUUCAGUAGGUCCAGCCAUCUGGAUUUAACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAUUUUCAUUACGUGA--| U G U G A UUCAGCUU
GACUUGCU GAG ACUGGUUUCAAGU GGUG UA GA C
CUGGAUGA UUC UGACUAAAGUUUA CCAC AU CU A
ACAAUUUAGGUCUACCGAC^ C G - G - CAAAACUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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Star sequence |
Bge-Mir-29-P1k_5p* |
mirBase accession | None |
Sequence |
0- ACUGGUUUCAAGUUGGUGGUAAGA -24
Get sequence
|
Mature sequence |
Bge-Mir-29-P1k_3p |
mirBase accession | None |
Sequence |
44- UAGCACCAUUUGAAAUCAGUGC -66
Get sequence
|