MirGeneDB 3.0

MirGeneDB ID

Bge-Mir-29-P1k

Family name MIR-29 (all species)
Seed AGCACCA
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-29-P1l  Bge-Mir-29-P2g  Bge-Mir-29-P2h 
Orthologues Aae-Mir-29-P1  Aga-Mir-29-P1  Agr-Mir-29-P1  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cin-Mir-29-o1  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dpu-Mir-29-P1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Esc-Mir-29-P1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Isc-Mir-29-P1  Lhy-Mir-29-P1  Llo-Mir-29-P1  Mgi-Mir-29-P1  Mom-Mir-29-P1  Npo-Mir-29-P1  Obi-Mir-29-P1  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pau-Mir-29-P1  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rph-Mir-29-P1  Sko-Mir-29-P1  Snu-Mir-29-P1  Spu-Mir-29-P1  Tca-Mir-29-P1  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1 
Node of Origin (locus) B. germanica
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
JPZV02062171.1: 158-223 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUUUUCAUUACGUGAGACUUGCUUGAGGACUGGUUUCAAGUUGGUGGUAAGAUUCAGCUUCAUUCAAAACUCUAGCACCAUUUGAAAUCAGUGCUUCAGUAGGUCCAGCCAUCUGGAUUUAACA
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Structure
        10          20        30        40        50        60   
UUAUUUUCAUUACGUGA--|       U   G             U    G  A  UUCAGCUU 
                   GACUUGCU GAG ACUGGUUUCAAGU GGUG UA GA        C
                   CUGGAUGA UUC UGACUAAAGUUUA CCAC AU CU        A
ACAAUUUAGGUCUACCGAC^       C   G             -    G  -  CAAAACUU 
    120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bge-Mir-29-P1k_5p*

mirBase accessionNone
Sequence
0- ACUGGUUUCAAGUUGGUGGUAAGA -24
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Mature sequence

Bge-Mir-29-P1k_3p

mirBase accessionNone
Sequence
44- UAGCACCAUUUGAAAUCAGUGC -66
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