Mir-29-P1b

MirGeneDB ID

Mun-Mir-29-P1b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Mun-Mir-29-P2b Mun-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Hme-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Lch-Mir-29-P1b Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Mun_miRNA_loci)

29-P1b_LR594641.1:12283700-12283840: 41-101 [-]

Precursor
(pre-Mir +30nt flank)

CUAGACUGAUGUUAAAUCUUCUCCAGGAAGCUGGUUUCUUGUGGUGGUUUAGAUUUAACUGCUUGUAUCUAGCACCAUAUGAAAUCAGUGUUCUUGGAGAAAGAAUGGCAGCAUUCUGCGA

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Structure

        10          20         30        40        50        60
CUAGACUGAUGUUAAAUC--           -|        U       GU     UUUAAC 
                    UUCUCCAGGAA GCUGGUUUC UGUGGUG  UUAGA      U
                    AAGAGGUUCUU UGACUAAAG AUACCAC  GAUCU      G
AGCGUCUUACGACGGUAAGA           G^        U       --     AUGUUC 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Mun-Mir-29-P1b_5p*

mirBase accession

None

Sequence

0- CUGGUUUCUUGUGGUGGUUUAGA -23

Get sequence

Mature sequence

Mun-Mir-29-P1b_3p

mirBase accession

None

Sequence

39- UAGCACCAUAUGAAAUCAGUGU -61

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