MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-29-P1b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-29b-1
Paralogues Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aca-Mir-29-P1b-v2  Aga-Mir-29-P1  Agr-Mir-29-P1  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cin-Mir-29-o1  Cja-Mir-29-P1b-v1  Cja-Mir-29-P1b-v2  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpi-Mir-29-P1b-v2  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dpu-Mir-29-P1  Dre-Mir-29-P1b1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Eca-Mir-29-P1b-v1  Eca-Mir-29-P1b-v2  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Isc-Mir-29-P1  Laf-Mir-29-P1b-v1  Laf-Mir-29-P1b-v2  Lch-Mir-29-P1b  Lhy-Mir-29-P1  Llo-Mir-29-P1  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b1-v2  Mdo-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v2  Mgi-Mir-29-P1  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmr-Mir-29-P1b-v1  Mmr-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mom-Mir-29-P1  Mun-Mir-29-P1b  Neu-Mir-29-P1b-v1  Neu-Mir-29-P1b-v2  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pab-Mir-29-P1b-v1  Pab-Mir-29-P1b-v2  Pau-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Rph-Mir-29-P1  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Snu-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 8673333-8673394 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b1)		 Mir-29-P1b1 Un_random: 8673333-8673394 [+] UCSC Ensembl
Mir-29-P2b1 Un_random: 8673485-8673545 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAGAUCCUACAUGAACUUCCUCCAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUCUCCUCAUCGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGACAGGAGGACUGCUCUGGGAGG
Get precursor sequence
Structure
        10          20         30        40        50        60 
GUGAGAUCCUACAUGAA-  -     C    -|         C      GU     UGUGUCU 
                  CU UCCUC AGAA GCUGGUUUCA GUGGUG  UUAGA       \
                  GA AGGGG UCUU UGACUAAAGU UACCAC  GAUCU       C
GGAGGGUCUCGUCAGGAG  C     U    G^         U      --     GCUACUC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P1b1_5p*
mirBase accessionNone
Sequence 
0- CUGGUUUCACGUGGUGGUUUAGA -23
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Mature sequence

Tni-Mir-29-P1b1_3p
mirBase accessionMIMAT0003056
Sequence 
40- UAGCACCAUUUGAAAUCAGUGU -62
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