MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-29-P2d1

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2b1  Tni-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 11: 8724289-8724347 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAUCCGAGCCACCCUCUUACCAGGGCUGACCGUUUUCCUCUGGUGUUUAGAGUAUUCUGCAUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUGGAGGGGAUGUCAUCCCCUCUGAU
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Structure
        10         20         30        40        50         
UAGAUCCGAGCCACCCU-  UA   GGGC-|     U    CUC       U   GUAUU 
                  CU  CCA     UGACCG UUUC   UGGUGUU AGA     C
                  GG  GGU     AUUGGC AAAG   ACCACGA UCU     U
UAGUCUCCCCUACUGUAG  GA   GUAAC^     U    UUU       -   UUACG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P2d1_5p*
mirBase accessionNone
Sequence 
0- ACCGUUUUCCUCUGGUGUUUAGA -23
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Mature sequence

Tni-Mir-29-P2d1_3p
mirBase accessionNone
Sequence 
37- UAGCACCAUUUGAAAUCGGUUA -59
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