Mir-29-P2d

MirGeneDB ID

Ami-Mir-29-P2d

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-29a-2

Paralogues

Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Ami-Mir-29-P2b

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2d2 Eba-Mir-29-P2 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713418.1: 1061842-1061901 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-29-P2d)

Mir-29-P1d-v1 NW_017713418.1: 1060963-1061027 [+] UCSC
Mir-29-P1d-v2 NW_017713418.1: 1060964-1061026 [+] UCSC
Mir-29-P2d NW_017713418.1: 1061842-1061901 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GAACUGGAAAAAAGUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUCAGUGUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACAGUAAUUGG

Get precursor sequence

Structure

        10            20         30        40        50          
GAACUGGAAAAAAGUCU----      -| GGC           UCU       C   GUCUCA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
GGUUAAUGACAACGAAAAGGG      A^ ---           UUU       -   GUUUGU 
.       110       100           90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ami-Mir-29-P2d_5p*

mirBase accession

MIMAT0038073

Sequence

0- ACCGAUUUCUCUUGGUGUUCAGA -23

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Mature sequence

Ami-Mir-29-P2d_3p

mirBase accession

MIMAT0038072

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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