Mir-29-P2d8

MirGeneDB ID

Bta-Mir-29-P2d8

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-29d

Paralogues

Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Bta-Mir-29-P2b Bta-Mir-29-P2d7

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2d8 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Eba-Mir-29-P2 Eca-Mir-29-P2d8 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

Ferungulata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037343.1: 75577623-75577680 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d8)

Mir-29-P1d8-v1 NC_037343.1: 75577055-75577119 [+] UCSC Ensembl
Mir-29-P1d8-v2 NC_037343.1: 75577056-75577118 [+] UCSC Ensembl
Mir-29-P2d8 NC_037343.1: 75577623-75577680 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCACCGGACCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCAAG

Get precursor sequence

Structure

        10            20         30        40        50         
CACCACCGGACCCAUCU----      -| GGC           UCC       C   GUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU     U
GAACUCCGACGACGAAAAGGG      A^ ---           UUU       -   GUUUU 
      110       100        90           80        70         60

Deep sequencing

Go to detailed chart

Comment

There are Drosha cuts -1 and -2.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-29-P2d8_5p*

mirBase accession

MIMAT0026919

Sequence

0- ACCGAUUUCUCCUGGUGUUCAGA -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-29d-5p

Mature sequence

Bta-Mir-29-P2d8_3p

mirBase accession

MIMAT0009275

Sequence

36- UAGCACCAUUUGAAAUCGGUUA -58

Get sequence

Proposed targets

TargetScanVert: bta-miR-29d-3p