MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-29-P2d-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Loc-Mir-29-P1d  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v2 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG3: 30969985-30970044 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUCUCCCUGAGGCCUCUUACCAAGGCUGACCGAUUUCUUUUGGUGUUCAGAGUCAUCUUCAGUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUAGGAGGAAGAUCAGCUGAACACUU
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Structure
        10            20        30        40        50          
CCUUCUCCCUGAGGCCU----|    CAAGGC           UUU       C   GUCAUC 
                     CUUAC      UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUG      AUUGGCUAAAG   ACCACGA UCU      U
UUCACAAGUCGACUAGAAGGA^    UAAC--           UUU       -   UUGACU 
.       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-29-P2d-v1_5p*

mirBase accessionNone
Sequence
0- ACCGAUUUCUUUUGGUGUUCAGA -23
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Mature sequence

Loc-Mir-29-P2d-v1_3p

mirBase accessionNone
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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