MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-29-P2a

Family name MIR-29 (all species)
Seed AGCACCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Loc-Mir-29-P1d  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2 
Orthologues Agr-Mir-29-P2  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Gsp-Mir-29  Hru-Mir-29-P2  Lch-Mir-29-P2a  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mgi-Mir-29-P2  Mom-Mir-29-P2  Npo-Mir-29-P2  Obi-Mir-29-P2  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pau-Mir-29-P2  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sko-Mir-29-P2  Sme-Mir-29-o2  Spu-Mir-29-P2  War-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG5: 40942544-40942602 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCAUGAACUCAGACCUUUCUCAGGAUGACUGAUUUCCUUUGGUGUUCAGAGUCUGCAGAGUUUCUAGCACCAUUUGAAAUCGGUUAUUUUGAAAGGUGUUAUGUCACUUAAGUAAU
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Structure
        10           20        30        40        50         
AGCCCAUGAACUCAGAC---|   C                 CUU       C   GUCUG 
                    CUUU UCAGGAUGACUGAUUUC   UGGUGUU AGA     C
                    GGAA AGUUUUAUUGGCUAAAG   ACCACGA UCU     A
UAAUGAAUUCACUGUAUUGU^   -                 UUU       -   UUGAG 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-29-P2a_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCCUUUGGUGUUCAGA -23
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Mature sequence

Loc-Mir-29-P2a_3p
mirBase accessionNone
Sequence 
37- UAGCACCAUUUGAAAUCGGUUA -59
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