Mir-29-P2b

MirGeneDB ID

Loc-Mir-29-P2b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Loc-Mir-29-P1d Loc-Mir-29-P2a Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG8: 12633711-12633770 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCCCCAGUUUCACCCCUUUUGAAGGAUGACUGAUUUCCUCUGGUGUUCAGAGUCCACAAUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGACAGGGGAUAAAUUCAUCUGCUUGA

Get precursor sequence

Structure

        10         20         30        40        50          
UUUCCCCAGUUUCACCC-      AAGG-|           CUC       C   GUCCAC 
                  CUUUUG     AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGGAC     UAUUGGCUAAAG   ACCACGA UCU      A
AGUUCGUCUACUUAAAUA      AGUAA^           UUU       -   UUUGUA 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-29-P2b_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCCUCUGGUGUUCAGA -23

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Mature sequence

Loc-Mir-29-P2b_3p

mirBase accession

None

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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