Mir-29-P2b

MirGeneDB ID

Loc-Mir-29-P2b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Loc-Mir-29-P1d Loc-Mir-29-P2a Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2

Orthologues

Aca-Mir-29-P2b Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Csc-Mir-29-P2 Cte-Mir-29-P2 Dno-Mir-29-P2b Dre-Mir-29-P2b1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Hsa-Mir-29-P2b Isc-Mir-29-P2 Lch-Mir-29-P2b Lgi-Mir-29-P2 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mml-Mir-29-P2b Mmu-Mir-29-P2b Mun-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ovu-Mir-29-P2 Pbv-Mir-29-P2b Pfl-Mir-29-P2 Pmi-Mir-29-P2 Rno-Mir-29-P2b Sha-Mir-29-P2b Sko-Mir-29-P2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG8: 12633711-12633770 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCCCCAGUUUCACCCCUUUUGAAGGAUGACUGAUUUCCUCUGGUGUUCAGAGUCCACAAUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGACAGGGGAUAAAUUCAUCUGCUUGA

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Structure

        10         20         30        40        50          
UUUCCCCAGUUUCACCC-      AAGG-|           CUC       C   GUCCAC 
                  CUUUUG     AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGGAC     UAUUGGCUAAAG   ACCACGA UCU      A
AGUUCGUCUACUUAAAUA      AGUAA^           UUU       -   UUUGUA 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-29-P2b_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCCUCUGGUGUUCAGA -23

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Mature sequence

Loc-Mir-29-P2b_3p

mirBase accession

None

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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