Mir-29-P2b

MirGeneDB ID

Gga-Mir-29-P2b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-29a

Paralogues

Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gga-Mir-29-P2d

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Esc-Mir-29-P2 Ete-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 4030419-4030478 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P1b-v1 1: 4029395-4029458 [+] UCSC Ensembl
Mir-29-P1b-v2 1: 4029396-4029457 [+] UCSC Ensembl
Mir-29-P2b 1: 4030419-4030478 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAGAUCUCAGUAACCCCUUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAAUAUUUUCUAGCACCAUUUGAAAUCGGUUAUAGUGAUUGGGGAAUUGCUCCUUGUGAAUU

Get precursor sequence

Structure

        10          20        30        40        50          
UGCAGAUCUCAGUAACC--|  UUAGAGG            UUU       C   GUCAAU 
                   CCU       AUGACUGAUUUC   UGGUGUU AGA      \
                   GGG       UAUUGGCUAAAG   ACCACGA UCU      A
UUAAGUGUUCCUCGUUAAG^  UUAGUGA            UUU       -   UUUAUA 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-29-P2b_5p*

mirBase accession

MIMAT0026487

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-29a-5p
miRDB: MIMAT0026487

Mature sequence

Gga-Mir-29-P2b_3p

mirBase accession

MIMAT0001096

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-29a-3p
miRDB: MIMAT0001096