Mir-29-P1b-v1

MirGeneDB ID

Gga-Mir-29-P1b-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-29b-1

Paralogues

Gga-Mir-29-P1b-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gga-Mir-29-P2b Gga-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cja-Mir-29-P1b-v2 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Eca-Mir-29-P1b-v2 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Laf-Mir-29-P1b-v2 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmr-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Neu-Mir-29-P1b-v2 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pab-Mir-29-P1b-v2 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 4029395-4029458 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P1b-v1 1: 4029395-4029458 [+] UCSC Ensembl
Mir-29-P1b-v2 1: 4029396-4029457 [+] UCSC Ensembl
Mir-29-P2b 1: 4030419-4030478 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCUUGACUAGAAACAAGCUCCCUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAACUAUUCAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGGAAGAAUGCCUGCUGCGAUCAUC

Get precursor sequence

Structure

        10          20        30         40        50        60  
AUCUUGACUAGAAACAAGC--   CU      -|         U      GU     UUUAACU 
                     UCC  CAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                     AGG  GUUCUU UGACUAAAGU UACCAC  GAUCU       A
CUACUAGCGUCGUCCGUAAGA   AG      G^         U      --     GUUACUU 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-29-P1b-v1_5p*

mirBase accession

MIMAT0026488

Sequence

0- GCUGGUUUCAUAUGGUGGUUUAGA -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-29b-1-5p
miRDB: MIMAT0026488

Mature sequence

Gga-Mir-29-P1b-v1_3p

mirBase accession

MIMAT0001097

Sequence

41- UAGCACCAUUUGAAAUCAGUGUU -64

Get sequence

Proposed targets

TargetScanVert: gga-miR-29b-3p
miRDB: MIMAT0001097