Mir-29-P1b-v1

MirGeneDB ID

Xtr-Mir-29-P1b-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-29d

Paralogues

Xtr-Mir-29-P1b-v2 Xtr-Mir-29-P1d Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cja-Mir-29-P1b-v2 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Eca-Mir-29-P1b-v2 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Laf-Mir-29-P1b-v2 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmr-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Neu-Mir-29-P1b-v2 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pab-Mir-29-P1b-v2 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr3: 75127548-75127611 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P2b chr3: 75124890-75124947 [-] UCSC Ensembl
Mir-29-P1b-v1 chr3: 75127548-75127611 [-] UCSC Ensembl
Mir-29-P1b-v2 chr3: 75127549-75127610 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACUAAGAGUGAAAGUCACUUUUUCAGGAGGCUGGUUUCAUGUGGUGGUUUAGAUUUAACUGCACAAUGUCUAGCACCAUAUGAAAUCAGUGUCCUUAGAAGGAGAAUUCCUGCACUACCAAAC

Get precursor sequence

Structure

        10         20          30        40        50        60  
AACUAAGAGUGAAAGUCA-       --|   G                 GU     UUUAACU 
                   CUUUUUC  AGGA GCUGGUUUCAUGUGGUG  UUAGA       \
                   GAGGAAG  UCCU UGACUAAAGUAUACCAC  GAUCU       G
CAAACCAUCACGUCCUUAA       AU^   G                 --     GUAACAC 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-29-P1b-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUUUCAUGUGGUGGUUUAGA -24

Get sequence

Mature sequence

Xtr-Mir-29-P1b-v1_3p

mirBase accession

MIMAT0003572

Sequence

41- UAGCACCAUAUGAAAUCAGUGUC -64

Get sequence

Proposed targets

TargetScanVert: xtr-miR-29d