MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-29-P1b-v2

Family name MIR-29 (all species)
Seed UAGCACC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-29b-2
Paralogues Aca-Mir-29-P1b-v1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Aca-Mir-29-P2b  Aca-Mir-29-P2d 
Orthologues Aae-Mir-29-P1  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpi-Mir-29-P1b-v2  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dre-Mir-29-P1b1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Hme-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Lch-Mir-29-P1b  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b1-v2  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1b2-v2  Mdo-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v2  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mun-Mir-29-P1b  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Xbo-Mir-29-P1  Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
5: 1037469-1037530 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b-v2)
Mir-29-P2b 5: 1036151-1036210 [-] UCSC Ensembl
Mir-29-P1b-v1 5: 1037468-1037531 [-] UCSC Ensembl
Mir-29-P1b-v2 5: 1037469-1037530 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAGUCCGUCUGGAGCUCCCUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAGUACACAAUGUCUAGCACCAUUUGAAAUCAGUGCUCUUGGAGGAAGAAUGGCAGCUCUUUCAGU
Get precursor sequence
Structure
        10          20         30        40        50        60 
AGGAAGUCCGUCUGGAGC--   CU     A-|         U      GU      UUAAGU 
                    UCC  CAGGA  GCUGGUUUCA AUGGUG  UUAGAU      \
                    AGG  GUUCU  UGACUAAAGU UACCAC  GAUCUG      A
UGACUUUCUCGACGGUAAGA   AG     CG^         U      --      UAACAC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-29-P1b-v2_5p*

mirBase accessionNone
Sequence
0- CUGGUUUCAUAUGGUGGUUUAGAU -24
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Mature sequence

Aca-Mir-29-P1b-v2_3p

mirBase accessionMIMAT0021914
Sequence
39- CUAGCACCAUUUGAAAUCAGUGC -62
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