MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-29-P1b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-29b-2
Paralogues Dre-Mir-29-P1d1  Dre-Mir-29-P1d2  Dre-Mir-29-P2b1  Dre-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aca-Mir-29-P1b-v2  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpi-Mir-29-P1b-v2  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b1  Hme-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Lch-Mir-29-P1b  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b1-v2  Mdo-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v2  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mun-Mir-29-P1b  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tni-Mir-29-P1b1  Xbo-Mir-29-P1  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr4: 11608208-11608269 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b1)
Mir-29-P2b1 chr4: 11606782-11606841 [-] UCSC Ensembl
Mir-29-P1b1 chr4: 11608208-11608269 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCGACUCUUUUGGACUCUUCCUCCAGAUGCUGGUUUCACAUGGUGGUUUAGAUGUGUUCUACCAAAGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGGGAUUUGCACUGGAUUGUGU
Get precursor sequence
Structure
        10          20         30        40        50        60 
GUCGACUCUUUUGGACU--       C  -|           C      GU     UGUGUUC 
                   CUUCCUC AG AUGCUGGUUUCA AUGGUG  UUAGA       \
                   GGAGGGG UC UGUGACUAAAGU UACCAC  GAUCU       U
UGUGUUAGGUCACGUUUAG       U  U^           U      --     GAAACCA 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-29-P1b1_5p*

mirBase accessionNone
Sequence
0- CUGGUUUCACAUGGUGGUUUAGA -23
Get sequence
Mature sequence

Dre-Mir-29-P1b1_3p

mirBase accessionMIMAT0001801
Sequence
40- UAGCACCAUUUGAAAUCAGUGU -62
Get sequence
Proposed targets TargetScanFish: dre-miR-29b