MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-29-P2b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-29a
Paralogues Dre-Mir-29-P1b1  Dre-Mir-29-P1d1  Dre-Mir-29-P1d2  Dre-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2b-v2  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2b-v2  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr4: 11606782-11606841 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b1)		 Mir-29-P2b1 chr4: 11606782-11606841 [-] UCSC Ensembl
Mir-29-P1b1 chr4: 11608208-11608269 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCUCUCUCUCUCUCCCCACCAAACGAUGACUGAUUUCCUUUGGUGCUUAGAGUCCCAUCUGUCAUCUAGCACCAUUUGAAAUCGGUUAUAAUGACUGGGGAUCAAUUCUUCAGCUUCU
Get precursor sequence
Structure
        10         20          30        40        50          
UCUCUCUCUCUCUCUCC-  A   AACG--|           CUU       U   GUCCCA 
                  CC CCA      AUGACUGAUUUC   UGGUGCU AGA      \
                  GG GGU      UAUUGGCUAAAG   ACCACGA UCU      U
UCUUCGACUUCUUAACUA  -   CAGUAA^           UUU       -   ACUGUC 
.       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-29-P2b1_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCCUUUGGUGCUUAGA -23
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Mature sequence

Dre-Mir-29-P2b1_3p
mirBase accessionMIMAT0001802
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence
Proposed targets TargetScanFish: dre-miR-29a