MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-29-P2b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-29a-2
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2b-v2  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2b-v2  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 8673485-8673545 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b1)		 Mir-29-P1b1 Un_random: 8673333-8673394 [+] UCSC Ensembl
Mir-29-P2b1 Un_random: 8673485-8673545 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCUACAGUGUUUCUCCACCAAAAGAUGACUGAUUUCCUCUGGUGCUUAGAGCCGCCUGCAGCCUUCUAGCACCAUUUGAAAUCGGUUAUAAAACUGUGGAUCAGUGCACCUCCAGGAC
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Structure
        10          20        30        40        50        60
CAAGCUACAGUGUUUCU--|   CAAAAG            CUC       U  AGCCGCC 
                   CCAC      AUGACUGAUUUC   UGGUGCU AG       U
                   GGUG      UAUUGGCUAAAG   ACCACGA UC       G
CAGGACCUCCACGUGACUA^   UCAAAA            UUU       -  UUCCGAC 
 .       110       100        90        80         70
Deep sequencing
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CommentMIGHT be a Group 2 - check
3' NTU No
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P2b1_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCCUCUGGUGCUUAG -22
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Mature sequence

Tni-Mir-29-P2b1_3p
mirBase accessionMIMAT0003054
Sequence 
39- UAGCACCAUUUGAAAUCGGUUA -61
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