Mir-29-P2b

MirGeneDB ID

Oan-Mir-29-P2b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-29a-1

Paralogues

Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Oan-Mir-29-P2d

Orthologues

Aca-Mir-29-P2b Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Csc-Mir-29-P2 Cte-Mir-29-P2 Dno-Mir-29-P2b Dre-Mir-29-P2b1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Hsa-Mir-29-P2b Isc-Mir-29-P2 Lch-Mir-29-P2b Lgi-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mml-Mir-29-P2b Mmu-Mir-29-P2b Mun-Mir-29-P2b Npo-Mir-29-P2 Obi-Mir-29-P2 Ocu-Mir-29-P2b Ovu-Mir-29-P2 Pbv-Mir-29-P2b Pfl-Mir-29-P2 Pmi-Mir-29-P2 Rno-Mir-29-P2b Sha-Mir-29-P2b Sko-Mir-29-P2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041737.1: 47607181-47607240 [-]

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P2b NC_041737.1: 47607181-47607240 [-]
Mir-29-P1b-v1 NC_041737.1: 47607568-47607631 [-]
Mir-29-P1b-v2 NC_041737.1: 47607569-47607630 [-]

Precursor
(pre-Mir +30nt flank)

CAAAGGCUCCUGUGACCCCUCUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUCAUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUUGGGGAAUAGCGCCACGUGACAG

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Structure

        10         20         30        40        50          
CAAAGGCUCCUGUGACC-    UAGAGG-|           UUU       C   GUCAAU 
                  CCUC       AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGG       UAUUGGCUAAAG   ACCACGA UCU      A
GACAGUGCACCGCGAUAA    UUAGUAA^           UUU       -   UUUACU 
.       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-29-P2b_5p*

mirBase accession

MIMAT0006806

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

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Mature sequence

Oan-Mir-29-P2b_3p

mirBase accession

MIMAT0006807

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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