MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-29-P1b-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-29b-1
Paralogues Cpi-Mir-29-P1b-v2  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpi-Mir-29-P2b  Cpi-Mir-29-P2d 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aca-Mir-29-P1b-v2  Aga-Mir-29-P1  Agr-Mir-29-P1  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cin-Mir-29-o1  Cja-Mir-29-P1b-v1  Cja-Mir-29-P1b-v2  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dpu-Mir-29-P1  Dre-Mir-29-P1b1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Eca-Mir-29-P1b-v1  Eca-Mir-29-P1b-v2  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Isc-Mir-29-P1  Laf-Mir-29-P1b-v1  Laf-Mir-29-P1b-v2  Lch-Mir-29-P1b  Lhy-Mir-29-P1  Llo-Mir-29-P1  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b1-v2  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1b2-v2  Mdo-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v2  Mgi-Mir-29-P1  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmr-Mir-29-P1b-v1  Mmr-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mom-Mir-29-P1  Mun-Mir-29-P1b  Neu-Mir-29-P1b-v1  Neu-Mir-29-P1b-v2  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pab-Mir-29-P1b-v1  Pab-Mir-29-P1b-v2  Pau-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Rph-Mir-29-P1  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Snu-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1  Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)		 JH584592: 6714640-6714703 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)		 Mir-29-P2b JH584592: 6713467-6713526 [-] UCSC Ensembl
Mir-29-P1b-v1 JH584592: 6714640-6714703 [-] UCSC Ensembl
Mir-29-P1b-v2 JH584592: 6714641-6714702 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGAAAACUCUCUGAAGCUCCCUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAACUACUCCGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGGAAGAAUGGCUGCCCUUCCAUCA
Get precursor sequence
Structure
        10          20        30         40        50        60  
GAUGAAAACUCUCUGAAGC--   CU      -|         U      GU     UUUAACU 
                     UCC  CAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                     AGG  GUUCUU UGACUAAAGU UACCAC  GAUCU       A
ACUACCUUCCCGUCGGUAAGA   AG      G^         U      --     GUGCCUC 
  120       110       100        90        80          70
Deep sequencing
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CommentBased on the 3' offset reads it appears that the 3p read is monouridylated.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-29-P1b-v1_5p*
mirBase accessionMIMAT0037671
Sequence 
0- GCUGGUUUCAUAUGGUGGUUUAGA -24
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Mature sequence

Cpi-Mir-29-P1b-v1_3p
mirBase accessionMIMAT0037672
Sequence 
41- UAGCACCAUUUGAAAUCAGUGUU -64
Get sequence