MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-29-P2d

Family name MIR-29 (all species)
Seed AGCACCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-29c
Paralogues Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2  Xtr-Mir-29-P1d  Xtr-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr2: 48076550-48076610 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d)
Mir-29-P1d chr2: 48073409-48073473 [+] UCSC Ensembl
Mir-29-P2d chr2: 48076550-48076610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUAGAACAACAGUCCCUUACACAGGAUGACCGAUCUCUCUUGGUGUUCAGAGGCUCAGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUAAUGUAAGGUGAAUGGCAACAAAGCUGCA
Get precursor sequence
Structure
        10            20        30        40        50        60
UAAUAGAACAACAGUCC----|     CAGG         C  UCU       C   GGCUCA 
                     CUUACA    AUGACCGAU UC   UGGUGUU AGA      G
                     GAAUGU    UAUUGGCUA AG   ACCACGA UCU      G
ACGUCGAAACAACGGUAAGUG^     AA--         A  UUU       -   ACUUCU 
 .       110       100          90        80         70
Deep sequencing
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CommentThere is a second Drosha cut -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-29-P2d_5p*

mirBase accessionMIMAT0003676
Sequence
0- ACCGAUCUCUCUUGGUGUUCAGA -23
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Proposed targets TargetScanVert: xtr-miR-29c-5p
Mature sequence

Xtr-Mir-29-P2d_3p

mirBase accessionMIMAT0003677
Sequence
39- UAGCACCAUUUGAAAUCGGUUA -61
Get sequence
Proposed targets TargetScanVert: xtr-miR-29c-3p