Mir-29-P2d

MirGeneDB ID

Xtr-Mir-29-P2d

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-29c

Paralogues

Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2 Xtr-Mir-29-P1d Xtr-Mir-29-P2b

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2d2 Eba-Mir-29-P2 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr2: 48076550-48076610 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d)

Mir-29-P1d chr2: 48073409-48073473 [+] UCSC Ensembl
Mir-29-P2d chr2: 48076550-48076610 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUAGAACAACAGUCCCUUACACAGGAUGACCGAUCUCUCUUGGUGUUCAGAGGCUCAGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUAAUGUAAGGUGAAUGGCAACAAAGCUGCA

Get precursor sequence

Structure

        10            20        30        40        50        60
UAAUAGAACAACAGUCC----|     CAGG         C  UCU       C   GGCUCA 
                     CUUACA    AUGACCGAU UC   UGGUGUU AGA      G
                     GAAUGU    UAUUGGCUA AG   ACCACGA UCU      G
ACGUCGAAACAACGGUAAGUG^     AA--         A  UUU       -   ACUUCU 
 .       110       100          90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -2 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-29-P2d_5p*

mirBase accession

MIMAT0003676

Sequence

0- ACCGAUCUCUCUUGGUGUUCAGA -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-29c-5p

Mature sequence

Xtr-Mir-29-P2d_3p

mirBase accession

MIMAT0003677

Sequence

39- UAGCACCAUUUGAAAUCGGUUA -61

Get sequence

Proposed targets

TargetScanVert: xtr-miR-29c-3p