MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-29-P2d7

Family name MIR-29 (all species)
Seed AGCACCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-29c-1
Paralogues Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P1d-v2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d8 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) C. familiaris
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr7: 6651339-6651396 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d7)
Mir-29-P2d7 chr7: 6651339-6651396 [-] UCSC Ensembl
Mir-29-P1d-v1 chr7: 6651878-6651942 [-] UCSC Ensembl
Mir-29-P1d-v2 chr7: 6651879-6651941 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCACCGGACCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAA
Get precursor sequence
Structure
        10            20         30        40        50         
CACCACCGGACCCAUCU----      -| GGC           UCC       C   GUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU     U
AAGCUCCGACGACGAAAAGGG      A^ ---           UUU       -   GUUUU 
      110       100        90           80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-29-P2d7_5p*

mirBase accessionNone
Sequence
0- ACCGAUUUCUCCUGGUGUUCAGA -23
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Mature sequence

Cfa-Mir-29-P2d7_3p

mirBase accessionMIMAT0006705
Sequence
36- UAGCACCAUUUGAAAUCGGUUA -58
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Proposed targets TargetScanVert: cfa-miR-29c
miRDB: MIMAT0006705