Mir-29-P2d7

MirGeneDB ID

Eca-Mir-29-P2d7

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-29c

Paralogues

Eca-Mir-29-P1b-v1 Eca-Mir-29-P1b-v2 Eca-Mir-29-P1d-v1 Eca-Mir-29-P1d-v2 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Eca-Mir-29-P2d8

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2d7 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2d7 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Eba-Mir-29-P2 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

Ferungulata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009152.1: 27511713-27511770 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d7)

Mir-29-P1d-v1 CM009152.1: 27511149-27511213 [+] UCSC Ensembl
Mir-29-P1d-v2 CM009152.1: 27511150-27511212 [+] UCSC Ensembl
Mir-29-P2d7 CM009152.1: 27511713-27511770 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCACUGGACCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAA

Get precursor sequence

Structure

        10            20         30        40        50         
CACCACUGGACCCAUCU----      -| GGC           UCC       C   GUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU     U
AAGCUCCGACGACGAAAAGGG      A^ ---           UUU       -   GUUUU 
      110       100        90           80        70         60

Deep sequencing

Go to detailed chart

Comment

There are Drosha cuts -1 and -2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-29-P2d7_5p*

mirBase accession

None

Sequence

0- ACCGAUUUCUCCUGGUGUUCAGA -23

Get sequence

Mature sequence

Eca-Mir-29-P2d7_3p

mirBase accession

MIMAT0012964

Sequence

36- UAGCACCAUUUGAAAUCGGUUA -58

Get sequence