MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-29-P2d7

Family name MIR-29 (all species)
Seed AGCACCA
Species Cow (Bos taurus)
MiRBase ID bta-mir-29c
Paralogues Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Bta-Mir-29-P1d7-v1  Bta-Mir-29-P1d7-v2  Bta-Mir-29-P1d8-v1  Bta-Mir-29-P1d8-v2  Bta-Mir-29-P2b  Bta-Mir-29-P2d8 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Eba-Mir-29-P2  Eca-Mir-29-P2d7  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) Ferungulata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037343.1: 75660930-75660987 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d7)		 Mir-29-P1d7-v1 NC_037343.1: 75660383-75660447 [+] UCSC Ensembl
Mir-29-P1d7-v2 NC_037343.1: 75660384-75660446 [+] UCSC Ensembl
Mir-29-P2d7 NC_037343.1: 75660930-75660987 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCACCGGACCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGAUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAG
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Structure
        10            20         30        40        50         
CACCACCGGACCCAUCU----      -| GGC   C       UCC       C   GUCUG 
                     CUUACA CA   UGA CGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUU GCUAAAG   ACCACGA UCU     U
GAGCUCCGACGACGAAAAGGG      A^ ---   A       UUU       -   GUUUU 
      110       100        90           80        70         60
Deep sequencing
CommentThere are Drosha cuts -1 and -2.
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Bta-Mir-29-P2d7_5p*
mirBase accessionNone
Sequence 
0- ACCGAUUUCUCCUGGUGUUCAGA -23
Get sequence
Mature sequence

Bta-Mir-29-P2d7_3p
mirBase accessionMIMAT0003829
Sequence 
36- UAGCACCAUUUGAAAUCGAUUA -58
Get sequence
Proposed targets TargetScanVert: bta-miR-29c