Mir-29-P1d-v2

MirGeneDB ID

Gga-Mir-29-P1d-v2

Family name

MIR-29 (all species)

Seed

UAGCACC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-29b-2

Paralogues

Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P2b Gga-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cja-Mir-29-P1d-v2 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v2 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dpu-Mir-29-P1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Eca-Mir-29-P1d-v2 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Laf-Mir-29-P1d-v2 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1d Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P1d2-v2 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mmr-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v2 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v2 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pab-Mir-29-P1d-v2 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d5-v2 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P1d6-v2 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

26: 2700164-2700225 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1d-v2)

Mir-29-P2d 26: 2699258-2699317 [-] UCSC Ensembl
Mir-29-P1d-v1 26: 2700163-2700226 [-] UCSC Ensembl
Mir-29-P1d-v2 26: 2700164-2700225 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACAUGCAAGAUCUGUCUUCCUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUCCCACUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUCUAGGAGCAAGAAUUACAGCGUGGGAGGA

Get precursor sequence

Structure

        10         20          30        40        50        60 
CUACAUGCAAGAUCUGU-   C  -      -|         C      G  U    UUUCCC 
                  CUU CU CUGGAA GCUGGUUUCA AUGGUG CU AGAU      \
                  GAA GA GAUCUU UGACUAAAGU UACCAC GA UCUA      A
AGGAGGGUGCGACAUUAA   C  G      G^         U      -  -    UGUUUC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-29-P1d-v2_5p*

mirBase accession

MIMAT0031072

Sequence

0- CUGGUUUCACAUGGUGGCUUAGAU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-29b-2-5p
miRDB: MIMAT0031072

Mature sequence

Gga-Mir-29-P1d-v2_3p

mirBase accession

MIMAT0001097

Sequence

39- CUAGCACCAUUUGAAAUCAGUGU -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-29b-3p
miRDB: MIMAT0001097