MirGeneDB 2.1
MirGeneDB ID

Lch-Mir-29-P2a

Family name MIR-29 (all species)
Seed AGCACCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-29-P1b  Lch-Mir-29-P1d  Lch-Mir-29-P2b  Lch-Mir-29-P2d 
Orthologues Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Csc-Mir-29-P2  Cte-Mir-29-P2  Esc-Mir-29-P2  Isc-Mir-29-P2  Lgi-Mir-29-P2  Loc-Mir-29-P2a  Npo-Mir-29-P2  Obi-Mir-29-P2  Ovu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Sko-Mir-29-P2  Spu-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127882.1: 625442-625501 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCCAGUUCCUGUGACCUUUGACAAGAUAACUGAUUUCCUUUGGUGUUCAGAGUCUGCUCUAGUUUCUAGCACCAUUUGAAAUCGGUUGUGUUGAAAGGAUGCAUCAUCUCAGACGAUG
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Structure
        10           20        30        40        50          
ACUCCAGUUCCUGUGAC---|   GA   G            CUU       C   GUCUGC 
                    CUUU  CAA AUAACUGAUUUC   UGGUGUU AGA      \
                    GGAA  GUU UGUUGGCUAAAG   ACCACGA UCU      U
GUAGCAGACUCUACUACGUA^   A-   G            UUU       -   UUGAUC 
.       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-29-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACUGAUUUCCUUUGGUGUUCAGA -23
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Mature sequence

Lch-Mir-29-P2a_3p (predicted)
mirBase accessionNone
Sequence 
38- UAGCACCAUUUGAAAUCGGUUG -60
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