Mir-29-P1m

MirGeneDB ID

Lpo-Mir-29-P1m

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-29-P1n

Orthologues

Aae-Mir-29-P1 Aga-Mir-29-P1 Agr-Mir-29-P1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cin-Mir-29-o1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Esc-Mir-29-P1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Isc-Mir-29-P1 Lhy-Mir-29-P1 Llo-Mir-29-P1 Mgi-Mir-29-P1 Mom-Mir-29-P1 Npo-Mir-29-P1 Obi-Mir-29-P1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spu-Mir-29-P1 Tca-Mir-29-P1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013667448.1: 36044-36102 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUACAACAGACUUUGUUCUUUCUUUGGGUCACUGGGUUCGUAUGGUGCAUAGAUGCAUUAGCAAUUCUAGCACCAUUUGAAUUCAGUUCAUCCAGAGGUCGUACGCUGCUCAUAAAGUG

Get precursor sequence

Structure

        10        20         30         40        50         
UUACAACAGACUUUGUUCUU-         C-|         U       A    UGCAU 
                     UCUUUGGGU  ACUGGGUUCG AUGGUGC UAGA     U
                     GGAGACCUA  UGACUUAAGU UACCACG AUCU     A
GUGAAAUACUCGUCGCAUGCU         CU^         U       -    UAACG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-29-P1m_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGGGUUCGUAUGGUGCAUAGA -23

Get sequence

Mature sequence

Lpo-Mir-29-P1m_3p

mirBase accession

None

Sequence

37- UAGCACCAUUUGAAUUCAGUUC -59

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