Mir-29-P2h

MirGeneDB ID

Dsi-Mir-29-P2h

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Fruit fly (Drosophila simulans)

MiRBase ID

Paralogues

Dsi-Mir-29-P1 Dsi-Mir-29-P2g

Orthologues

Aae-Mir-29-P2h Aga-Mir-29-P2h Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2h Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cte-Mir-29-P2 Dan-Mir-29-P2h Dgr-Mir-29-P2 Dma-Mir-29-P2 Dme-Mir-29-P2h Dmo-Mir-29-P2h Dpu-Mir-29-P2 Dya-Mir-29-P2h Eba-Mir-29-P2 Esc-Mir-29-P2 Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Mgi-Mir-29-P2 Mom-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pau-Mir-29-P2 Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sko-Mir-29-P2 Sme-Mir-29-o2 Spu-Mir-29-P2 Tca-Mir-29-P2h War-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

3R: 3864973-3865069 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAUCGUCCUCGUGUCAAAUUCAUUUUGGAACUGAAUUCUCGUGGGUCUGCACUGACAACACUGACCGCUCCAGGGCCAAUUGUUCAUUUUGAAAUUGAAAUUCUGUAGCACCAUGAGAUUCAGCUCUGGCGUGAAUUUCAAACAUGCAUCCACAAC

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Structure

        10          20        30        40        50        60        70        
CAAUCGUCCUCGUGUCA--|      U UG  A      U       GU     CUGACAACACUGACCGCUCCAGGGC 
                   AAUUCAU U  GA CUGAAU CUCGUGG  CUGCA                         C
                   UUAAGUG G  CU GACUUA GAGUACC  GAUGU                         A
CAACACCUACGUACAAACU^      C GU  C      -       AC     CUUAAAGUUAAAGUUUUACUUGUUA 
     150       140       130       120        110       100        90        80

Deep sequencing

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3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dsi-Mir-29-P2h_5p*

mirBase accession

None

Sequence

0- ACUGAAUUCUCGUGGGUCUGCA -22

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Mature sequence

Dsi-Mir-29-P2h_3p

mirBase accession

None

Sequence

76- UAGCACCAUGAGAUUCAGCUC -97

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