| MirGeneDB ID | Lan-Mir-2-o106a |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-2-o100
Lan-Mir-2-o101a
Lan-Mir-2-o101b
Lan-Mir-2-o102
Lan-Mir-2-o103
Lan-Mir-2-o104
Lan-Mir-2-o105
Lan-Mir-2-o106b
Lan-Mir-2-o107
Lan-Mir-2-o108
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(LinAna_1.0) |
LFEI01002046: 29074-29133 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUUGAGAUGAGACAAGUGUGUUGUGUGGCUGGUCAAAGUGGUUGUGACAGGGUGUGCUAGCUUUCCUAUCACAGCCUGCUUUGAUGAGCUAUACACAACACCAGACGACUGCCACUGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGUUGAGAUGAGACAAGU -- G -| C GUGUGC
GUGUUGUGU GGCU GUCAAAGU GGUUGUGA AGG \
CACAACACA UCGA UAGUUUCG CCGACACU UCC U
CGGUCACCGUCAGCAGAC UA G U^ A UUUCGA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-2-o106a_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGGUCAAAGUGGUUGUGACAGG -22
Get sequence
|
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| Mature sequence |
Lan-Mir-2-o106a_3p |
| mirBase accession | None |
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| Sequence |
37- UAUCACAGCCUGCUUUGAUGAGC -60
Get sequence
|
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