MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o105

Family name MIR-2 (all species)
Seed AUCACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01000806: 164274-164333 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGACAUUUAGAGUGCUAGUGUCCCCGUGGGCAUCAAGGGGGCUGUGAUGUGUAGUCUAUUGUUCAUAUCACAGCCCGCUUUGAUGAGCUAUGAUGACACUUCAACGCCAUUGCUGCCUA
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Structure
        10          20        30          40        50        
AUGACAUUUAGAGUGCU--      CC     G-        -|            UAGUC 
                   AGUGUC  CGUGG  CAUCAAGG GGGCUGUGAUGUG     U
                   UCACAG  GUAUC  GUAGUUUC CCCGACACUAUAC     A
AUCCGUCGUUACCGCAACU      UA     GA        G^            UUGUU 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Lan-Mir-2-o105_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCAUCAAGGGGGCUGUGAUGUG -22
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Mature sequence

Lan-Mir-2-o105_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCCGCUUUGAUGAGCU -60
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