MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o103

Family name MIR-2 (all species)
Seed AUCACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01000397: 182869-182928 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGUGAAGAUUGCGAUUGCUGAGCUGAGUUUGUCAAAGUGGCUGUGAUUUGGUUGAAAUUAACGCAUAUCACAGCCCGCUUUGACGAGCUUACGGCAACACGACACAACCAGCUAAGCU
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Structure
        10             20        30        40         50         
UGAGUGAAGAUUGCGAU-----|    AGC                 -       U  GUUGAA 
                      UGCUG   UGAGUUUGUCAAAGUGG CUGUGAU UG      \
                      ACGGC   AUUCGAGCAGUUUCGCC GACACUA AC      A
UCGAAUCGACCAACACAGCACA^    ---                 C       U  GCAAUU 
.       110       100           90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Lan-Mir-2-o103_5p* (predicted)
mirBase accessionNone
Sequence 
0- UUGUCAAAGUGGCUGUGAUUUG -22
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Mature sequence

Lan-Mir-2-o103_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCCGCUUUGACGAGC -60
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