MirGeneDB ID | Lan-Mir-2-o104 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-2-o100
Lan-Mir-2-o101a
Lan-Mir-2-o101b
Lan-Mir-2-o102
Lan-Mir-2-o103
Lan-Mir-2-o105
Lan-Mir-2-o106a
Lan-Mir-2-o106b
Lan-Mir-2-o107
Lan-Mir-2-o108
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Protostomia
|
Genome context (LinAna_1.0) |
LFEI01000806: 162292-162350 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCUCUACCAUGUACCAGCUUGCUUUCUGUUCGUUUAAGGGGCUGUGAAAUGUUGAGUUGUUUUCAUAUCACAGCCCGCUUUGACGAGCUAGAGGGGAAGACCUGACCAACACUAUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCUCUACCAUGUACCAG- G - U -| A UUGAG
CUU CUUUCU GUUCGUU AAG GGGCUGUGA AUG U
GAA GGGAGA CGAGCAG UUC CCCGACACU UAC U
CUUUAUCACAACCAGUCCA G U U G^ A UUUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Lan-Mir-2-o104_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCGUUUAAGGGGCUGUGAAAUG -22
Get sequence
|
Mature sequence |
Lan-Mir-2-o104_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCCCGCUUUGACGAGC -59
Get sequence
|