MirGeneDB ID | Lan-Mir-2-o102 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-2-o100
Lan-Mir-2-o101a
Lan-Mir-2-o101b
Lan-Mir-2-o103
Lan-Mir-2-o104
Lan-Mir-2-o105
Lan-Mir-2-o106a
Lan-Mir-2-o106b
Lan-Mir-2-o107
Lan-Mir-2-o108
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Protostomia
|
Genome context (LinAna_1.0) |
LFEI01000222: 414455-414514 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGGAGAGGCAGAAAGUGCAUCUCUCCCCACCAUUAAAGUGGCUGUGAUGUGUUGAUUGUAUACUCAUAUCACAGCCUGCUUUGAUGAGAGGGAGUGACAACGCCACAUCUGAUGUUCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGGAGAGGCAGAAAGUGCA-- U CAC -| UUGAUU
UC CUCCC CAUUAAAGU GGCUGUGAUGUG \
AG GAGGG GUAGUUUCG CCGACACUAUAC G
AUCUUGUAGUCUACACCGCAAC U AGA U^ UCAUAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-2-o102_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCAUUAAAGUGGCUGUGAUGUG -22
Get sequence
|
Mature sequence |
Lan-Mir-2-o102_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGCCUGCUUUGAUGAGA -60
Get sequence
|