| MirGeneDB ID | Sme-Mir-2-o129 |
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| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2b
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| Paralogues |
Sme-Mir-2-o122a
Sme-Mir-2-o122b
Sme-Mir-2-o123
Sme-Mir-2-o124
Sme-Mir-2-o125
Sme-Mir-2-o126
Sme-Mir-2-o127
Sme-Mir-2-o128
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Protostomia
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000014_dd_Smes_g4_14: 3096425-3096480 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUAGUUGAAUAUUUUUAUGGUUAUUGCUUUCAUCAUUGUUGGUUGUCAGUUAUUGUAUUCAAUAUCACAGCCAAUUUUGAUGAGAUGAGAUAGCUUUCAGUCGUCACAAUUUUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUAGUUGAAUAUUUUUAU- GC-| UU CAGUUAUUG
GGUUAUU UUUCAUCA GUUGGUUGU U
UCGAUAG AGAGUAGU UAACCGACA A
CUUUUUAACACUGCUGACUU AGU^ UU CUAUAACUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-2-o129_5p* |
| mirBase accession | MIMAT0003965 |
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| Sequence |
0- UCAUCAUUGUUGGUUGUCAGU -21
Get sequence
|
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| Mature sequence |
Sme-Mir-2-o129_3p |
| mirBase accession | MIMAT0003966 |
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| Sequence |
35- UCACAGCCAAUUUUGAUGAGA -56
Get sequence
|
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