MirGeneDB 3.0

MirGeneDB ID

Pau-Mir-2-o111

Family name MIR-2 (all species)
Seed AUCACAG
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-2-P12  Pau-Mir-2-o109  Pau-Mir-2-o110  Pau-Mir-2-o112  Pau-Mir-2-o113 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) P. australis
Node of Origin (family) Protostomia
Genome context
(Phoronis_australis_GCA_002633005)
NMRA01000510.1: 289683-289744 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUGGCCAGUUGUUGCGCGCUGUAGUCGGGUCGUUAAAGUGGCUGUGAUGUGCUAUCACUCAUGACAUAUCACAGCCUGCUUUGACGAGUUGACAGGCACGAUUUAUCCUCUUGACCAAAG
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Structure
        10            20        30        40         50          
GAGUGGCCAGUUGUUGC----|C   GUA     G          -            CUAUCA 
                     G GCU   GUCGG UCGUUAAAGU GGCUGUGAUGUG      \
                     C CGG   CAGUU AGCAGUUUCG CCGACACUAUAC      C
GAAACCAGUUCUCCUAUUUAG^A   A--     G          U            AGUACU 
120       110       100          90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pau-Mir-2-o111_5p* (predicted)

mirBase accessionNone
Sequence
0- GUCGUUAAAGUGGCUGUGAUGUG -23
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Mature sequence

Pau-Mir-2-o111_3p

mirBase accessionNone
Sequence
38- UAUCACAGCCUGCUUUGACGAGUU -62
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