Mir-2-o113

MirGeneDB ID

Pau-Mir-2-o113

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Pau-Mir-2-P12 Pau-Mir-2-o109 Pau-Mir-2-o110 Pau-Mir-2-o111 Pau-Mir-2-o112

Orthologues

Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

P. australis

Node of Origin (family)

Protostomia

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000510.1: 291100-291157 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUUGCAAAGCAAAUGGAUGCGUUGAACUUUGUCAAAGUGGCUGUGAUGUGUUGUGAUUGCUCAUAUCACAGCCUGCUUUGAUGAGUUUCAACUAGCCCAUUCUCACUGGUUCUUUG

Get precursor sequence

Structure

        10        20          30        40         50        
GUUUUGCAAAGCAAAUGGAUGC--      C  UG       -|           UUGUG 
                        GUUGAA UU  UCAAAGU GGCUGUGAUGUG     \
                        CAACUU GA  AGUUUCG CCGACACUAUAC     A
GUUUCUUGGUCACUCUUACCCGAU      U  GU       U^           UCGUU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.

3' NTU

Motifs

Tissue expression

To

Star sequence

Pau-Mir-2-o113_5p*

mirBase accession

None

Sequence

0- UUGUCAAAGUGGCUGUGAUGUG -22

Get sequence

Mature sequence

Pau-Mir-2-o113_3p

mirBase accession

None

Sequence

35- UAUCACAGCCUGCUUUGAUGAGU -58

Get sequence