MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-2-o113

Family name MIR-2 (all species)
Seed AUCACAG
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-2-P12  Pau-Mir-2-o109  Pau-Mir-2-o110  Pau-Mir-2-o111  Pau-Mir-2-o112 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) P. australis
Node of Origin (family) Protostomia
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000510.1: 291100-291157 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUGCAAAGCAAAUGGAUGCGUUGAACUUUGUCAAAGUGGCUGUGAUGUGUUGUGAUUGCUCAUAUCACAGCCUGCUUUGAUGAGUUUCAACUAGCCCAUUCUCACUGGUUCUUUG
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Structure
        10        20          30        40         50        
GUUUUGCAAAGCAAAUGGAUGC--      C  UG       -|           UUGUG 
                        GUUGAA UU  UCAAAGU GGCUGUGAUGUG     \
                        CAACUU GA  AGUUUCG CCGACACUAUAC     A
GUUUCUUGGUCACUCUUACCCGAU      U  GU       U^           UCGUU 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Ph
Star sequence

Pau-Mir-2-o113_5p*
mirBase accessionNone
Sequence 
0- UUGUCAAAGUGGCUGUGAUGUG -22
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Mature sequence

Pau-Mir-2-o113_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCUGCUUUGAUGAGU -58
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