| MirGeneDB ID | Pau-Mir-2-o110 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Horseshoe worm (Phoronis australis) |
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| MiRBase ID |
|
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| Paralogues |
Pau-Mir-2-P12
Pau-Mir-2-o109
Pau-Mir-2-o111
Pau-Mir-2-o112
Pau-Mir-2-o113
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
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| Node of Origin (locus) |
P. australis
|
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| Node of Origin (family) |
Protostomia
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Genome context
(Phoronis_australis_GCA_002633005) |
NMRA01000510.1: 288743-288802 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCCUGGUGUCGAGGCUAUCGGUUACUUGCCCGUUAUAGUGGCUGUGAUGUGUGAACAUUGGUUCGUAUCACAGCCCAGCUAUGACGAGCUGGUGGCUGGACUAUGUCCGCUAGCAUGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCCUGGUGUCGAGGCUA-- U C --| UGAAC
UCGGUUACU GC CGUUAUAGU GGCUGUGAUGUG A
GGUCGGUGG CG GCAGUAUCG CCGACACUAUGC U
CAGUACGAUCGCCUGUAUCA U A AC^ UUGGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pau-Mir-2-o110_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCGUUAUAGUGGCUGUGAUGUG -22
Get sequence
|
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| Mature sequence |
Pau-Mir-2-o110_3p |
| mirBase accession | None |
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| Sequence |
36- UAUCACAGCCCAGCUAUGACGAGC -60
Get sequence
|
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