MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-2-o110

Family name MIR-2 (all species)
Seed AUCACAG
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-2-P12  Pau-Mir-2-o109  Pau-Mir-2-o111  Pau-Mir-2-o112  Pau-Mir-2-o113 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) P. australis
Node of Origin (family) Protostomia
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000510.1: 288743-288802 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCUGGUGUCGAGGCUAUCGGUUACUUGCCCGUUAUAGUGGCUGUGAUGUGUGAACAUUGGUUCGUAUCACAGCCCAGCUAUGACGAGCUGGUGGCUGGACUAUGUCCGCUAGCAUGAC
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Structure
        10          20        30        40          50        
GUCCUGGUGUCGAGGCUA--         U  C         --|           UGAAC 
                    UCGGUUACU GC CGUUAUAGU  GGCUGUGAUGUG     A
                    GGUCGGUGG CG GCAGUAUCG  CCGACACUAUGC     U
CAGUACGAUCGCCUGUAUCA         U  A         AC^           UUGGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ph
Star sequence

Pau-Mir-2-o110_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCGUUAUAGUGGCUGUGAUGUG -22
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Mature sequence

Pau-Mir-2-o110_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCCAGCUAUGACGAGC -60
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