MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-2-o109

Family name MIR-2 (all species)
Seed CACAGCC
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-2-P12  Pau-Mir-2-o110  Pau-Mir-2-o111  Pau-Mir-2-o112  Pau-Mir-2-o113 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) P. australis
Node of Origin (family) Protostomia
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000510.1: 285572-285637 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUGGUGCUCGGCAUCUAUGCCGUGCCUGACCAUCACAGCUGGUGUGCCGGUAGUACACUCUCUAGCAGCCUAUCACAGCCAGCUUUGAUGAGCCUGGCGCAGCAUAACUCACAGACGAUGCACU
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Structure
        10         20        30         40         50         60 
UUCUGGUGCUCGGCAUC-     C     UGAC-     C      -    CC-|GUAGUACAC 
                  UAUGC GUGCC     CAUCA AGCUGG UGUG   G         U
                  AUACG CGCGG     GUAGU UCGACC ACAC   C         C
UCACGUAGCAGACACUCA     A     UCCGA     U      G    UAU^CGACGAUCU 
    120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Pau-Mir-2-o109_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCAUCACAGCUGGUGUGCCG -21
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Mature sequence

Pau-Mir-2-o109_3p
mirBase accessionNone
Sequence 
44- UCACAGCCAGCUUUGAUGAGCC -66
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