MirGeneDB 3.0

MirGeneDB ID

Ofu-Mir-2-o158

Family name MIR-2 (all species)
Seed AUCACAG
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-2-P12  Ofu-Mir-2-o153  Ofu-Mir-2-o154  Ofu-Mir-2-o155  Ofu-Mir-2-o156  Ofu-Mir-2-o157 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)
CAIIXF020000003.1: 15964675-15964734 [+]
Precursor
(pre-Mir +30nt flank)
GUUAGGCACUAGAAAAGCACUAUAUAUGGCUCAUGAAAGUGGUUGUGAUCUGAUGCUAUUGUUACCAUAUCACAGCCUGCUUUGAUGAGUUGUGUGUAGUAAAUAACACUAUCCUACAAA
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Structure
        10          20        30        40         50         
GUUAGGCACUAGAAAAGC--        UG      G     -|        C  AUGCUA 
                    ACUAUAUA  GCUCAU AAAGU GGUUGUGAU UG      \
                    UGAUGUGU  UGAGUA UUUCG CCGACACUA AC      U
AAACAUCCUAUCACAAUAAA        GU      G     U^        U  CAUUGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Ofu-Mir-2-o158_5p* (predicted)

mirBase accessionNone
Sequence
0- UCAUGAAAGUGGUUGUGAUCUG -22
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Mature sequence

Ofu-Mir-2-o158_3p

mirBase accessionNone
Sequence
37- UAUCACAGCCUGCUUUGAUGAGU -60
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