| MirGeneDB ID | Ofu-Mir-2-o156 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
|---|
| Species |
Tubeworm (Owenia fusiformis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ofu-Mir-2-P12
Ofu-Mir-2-o153
Ofu-Mir-2-o154
Ofu-Mir-2-o155
Ofu-Mir-2-o157
Ofu-Mir-2-o158
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000003.1: 15960548-15960608 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCGCCACCAUUUGGUGAGUUUUUAUAUGUGCCAUUAAGUUGAGUGUGAAAUGUGUGUGUCUUUCAUAUCACAGCCAGCUUUGAUGAGCGCAUAUGAUGCUUUUCAUUCUACAUAAGGCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCGCCACCAUUUGGUG--- UU - -| AG A UGUGU
AGU UUAUAUGUGC CAUU AAGUUG UGUGA AUG \
UCG AGUAUACGCG GUAG UUCGAC ACACU UAC G
AUCGGAAUACAUCUUACUUU U- A U^ CG A UUUCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ofu-Mir-2-o156_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCCAUUAAGUUGAGUGUGAAAUG -23
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-2-o156_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUCACAGCCAGCUUUGAUGAGCGC -61
Get sequence
|
|---|
