| MirGeneDB ID | Ofu-Mir-2-o153 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-2-P12
Ofu-Mir-2-o154
Ofu-Mir-2-o155
Ofu-Mir-2-o156
Ofu-Mir-2-o157
Ofu-Mir-2-o158
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000003.1: 15958470-15958526 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GACGUGUACAAGAGAUACGUGUGACUUAGGAGUCACUGCUGGCCGCCGAUAGUGACAUUGACCUAUCACAGCCAGCAUUGAUGAGCCUAGUUACAUUGCAGCUCCACCUAUUAGUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGUGUACAAGAGAUAC--- U A--| C CGCC GUGAC
GUGUGAC UAGG GUCA UGCUGGC GAUA A
UACAUUG AUCC UAGU ACGACCG CUAU U
UGUGAUUAUCCACCUCGACGU - GAG^ U ACA- CCAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Ofu-Mir-2-o153_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGUCACUGCUGGCCGCCGAUA -21
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-2-o153_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UCACAGCCAGCAUUGAUGAGCC -57
Get sequence
|
|---|
