MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-2-o41

Family name MIR-2 (all species)
Seed AUCACAG
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-2-o40-v1  Snu-Mir-2-o40-v2  Snu-Mir-2-o42-v1  Snu-Mir-2-o42-v2  Snu-Mir-2-o43  Snu-Mir-2-o44 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) S. nudus
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049316.1: 13593873-13593932 [+]
Precursor
(pre-Mir +30nt flank)
AUAGGUACUGCGAUCUUUGCAGUCUCUCAGUCGUCAAACUGUCUGUGAAGUGUUCAUGUUUAAUCACAUCACAGCCAGCUUUGAUGGGCUGAAGGACUGGAUGCCCUCAAGGUAACAAAU
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Structure
        10          20        30          40        50        
AUAGGUACUGCGAUCUUUG--     UC    -        -|  U      A   UUCAU 
                     CAGUC  UCAG UCGUCAAA CUG CUGUGA GUG     G
                     GUCAG  AGUC GGUAGUUU GAC GACACU CAC     U
UAAACAAUGGAACUCCCGUAG     GA    G        C^  C      A   UAAUU 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Snu-Mir-2-o41_5p*
mirBase accessionNone
Sequence 
0- UCGUCAAACUGUCUGUGAAGUG -22
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Mature sequence

Snu-Mir-2-o41_3p
mirBase accessionNone
Sequence 
36- CAUCACAGCCAGCUUUGAUGGGCU -60
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