| MirGeneDB ID | Snu-Mir-2-o42-v1 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
|---|
| Species |
Peanut worm (Sipunculus nudus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Snu-Mir-2-o40-v1
Snu-Mir-2-o40-v2
Snu-Mir-2-o41
Snu-Mir-2-o42-v2
Snu-Mir-2-o43
Snu-Mir-2-o44
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
S. nudus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049316.1: 13594492-13594547 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAUAAGUGGGAUUUGCCAGUUGACCAGAGCAUCAUAGUGGCUGUGAUGUGCGGUGAUCAGGACAUAUCACAGCCAGCUUUGAUGAGCCUGGUCGGGAGGCAUCAUCAGCACAAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAAGUGGGAUUUGCCAG-- AG- U -| CGGUG
UUGACCAG CAUCA AG UGGCUGUGAUGUG A
GGCUGGUC GUAGU UC ACCGACACUAUAC U
CUGAACACGACUACUACGGAG CGA U G^ AGGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Snu-Mir-2-o42-v1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AUCAUAGUGGCUGUGAUGUG -20
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-2-o42-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UAUCACAGCCAGCUUUGAUGAG -56
Get sequence
|
|---|
